This R package compares multiple narrowPeak data from different experiments to extract common peak regions. The size of the analyzed region is adjustable, as well as the number of experiences in which a peak must be present to tag a potential region as a consensus region. If needed, the consensus regions can be extended to cover the entire regions of enclosed peaks.
consensusSeekeR is now an official package of Bioconductor. The current release can be directly downloaded from their website: Current release
If you use this package for a publication, we would ask you to cite the following:
Samb R, Khadraoui K, Belleau P, et al. (2015) Using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling. Statistical Applications in Genetics and Molecular Biology. Published online before print December 10, 2015. doi:10.1515/sagmb-2014-0098
Astrid Deschênes, Fabien Claude Lamaze, Pascal Belleau and Arnaud Droit
This package and the underlying consensusSeekeR code are distributed under the Artistic license 2.0. You are free to use and redistribute this software.
For more information on Artistic 2.0 License see http://opensource.org/licenses/Artistic-2.0
If you have any bugs or feature requests, let us know. Thanks!
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