MicrobiomeProfiler is an R-shiny package based on clusterProfiler, is user-friendly tool for functional enrichment analysis in microbiome data (T Wu, et al., 2021).
if (!require("BiocManager"))
install.packages("BiocManager")
BiocManager::install("MicrobiomeProfiler")
## Note that having installed clusterProfiler,config,DT,enrichplot,golem,magrittr,shiny,shinyWidgets,shinycustomloader,htmltools,ggplot2
if (!requireNamespace("devtools", quietly=TRUE))
install.packages("devtools")
devtools::install_github("YuLab-SMU/MicrobiomeProfiler")
library(MicrobiomeProfiler)
run_MicrobiomeProfiler()
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