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Showing content from https://github.com/XSLiuLab below:

XSLiuLab · GitHub

Research group led by Xue-Song Liu in ShanghaiTech. University

2. TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020

   R 32 16

3. Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/

   R 12 7

4. Extrachromosomal DNA is associated with decreased immune cell infiltration and antigen presentation, represents a potential cancer immune evasion mechanism

   HTML 8 3

5. Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution

   HTML 11 1

6. Shiny Web Server and Database for Neoantigen discovery

   Jupyter Notebook 4

• single-cell-CNA-signature Public

  This repository provides the analysis reports, code and data for readers who are insterest in this project and make it easier to reproduce the whole analysis procedure.

  XSLiuLab/single-cell-CNA-signature’s past year of commit activity R 2 1 0 0 Updated Aug 2, 2025
• XSLiuLab/CNAfingerprint’s past year of commit activity R 0 Apache-2.0 0 0 0 Updated Jun 26, 2025
• XSLiuLab/AbTcrAI’s past year of commit activity HTML 0 0 0 0 Updated May 29, 2025
• DeepMeta Public

  Precise metabolic dependencies of cancer through deep learning

  XSLiuLab/DeepMeta’s past year of commit activity Jupyter Notebook 3 MIT 1 1 0 Updated May 28, 2025
• XSLiuLab/CNV_lcWGS_benchmark’s past year of commit activity 0 0 0 0 Updated Apr 9, 2025
• CNAfingerprint_mCRC Public

  CNAfingerprint, A biomarker for oxaliplatin-based chemotherapy response prediction in mCRC

  XSLiuLab/CNAfingerprint_mCRC’s past year of commit activity 0 0 0 0 Updated Feb 26, 2025
• XSLiuLab/CNAfingerprint_demo’s past year of commit activity 0 0 0 0 Updated Jan 1, 2025
• TcrDesign Public

  T Cell Receptor Design Through Deep Learning Methods

  XSLiuLab/TcrDesign’s past year of commit activity Python 2 0 0 0 Updated Dec 25, 2024
• CancerBiology Public

  Support materials for 《Cancer Biology》，Shanghaitech University

  XSLiuLab/CancerBiology’s past year of commit activity JavaScript 0 0 0 0 Updated Dec 23, 2024
• Pep2TCR Public

  Pep2TCR: a novel deep learning method for CD4 TCR specificity prediction

  XSLiuLab/Pep2TCR’s past year of commit activity Python 1 MIT 0 0 0 Updated Sep 9, 2024

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