Pipeline for data analysis using IDEAS (Individual level Differential Expression Analysis for Single cells) (Zhang, Liu et al. (2021)). Please refer to repository https://github.com/Sun-lab/ideas for the ideas R package. This project is licensed under the terms of the MIT license.
Code and results for simulation studies
Code and results to analyze scRNA-seq data from autism patients and healthy controls (Velmeshev et al. (2019)).
Code and results to analyze scRNA-seq data from COVID-19 patients with mild vs severe disease status (Schulte-Schrepping et al. 2020).
M Zhang, S Liu et al. (2021) Individual-level Differential Expression Analysis for Single Cell RNA-seq data
D Velmeshev et al. Single-cell genomics identifies cell type–specific molecular changes in autism. Science 364.6441 (2019): 685-689.
Schulte-Schrepping, Jonas, et al. "Severe COVID-19 is marked by a dysregulated myeloid cell compartment." Cell 182.6 (2020): 1419-1440.
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