Hello,
I am rerunning some code that uses SomaDataIO that I haven't run in several months and it does not seem to work as before. I think the issue has to do with dplyr verbs. When I use dplyr::group_by() followed by filter() on a soma_adat, I get the following message:
The object is not a 'soma_adat' class objects: 'grouped_df', 'tbl_df', 'tbl', 'data.frame' Error in filter.soma.adat(., row_number()=1): is_intact_attr(.data) is not TRUE.
I figured out a work-around for that issue, but I applied a custom function to log transform the proteins and got the same message repeated over and over: "Attributes has only 3 entries: 'names', 'row.names', 'class.'
I have searched closed issues on github and found some similar issues, but most of them were quite old and marked as complete. I tried reverting to dplyr version 1.0.6 per #15 but got an error when trying to load SomaDataIO, which needed at least version 1.0.10 of dplyr.
I am not sure why this has happened suddenly - thanks in advance for any help!
Laura Pyle
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