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Showing content from https://github.com/PacificBiosciences/DevNet/wiki/Datasets below:

Datasets · PacificBiosciences/DevNet Wiki · GitHub

Here are some sample datasets so that you can explore PacBio® sequence data as well as file types generated by the PacBio RS and SMRT® Analysis.

Sequel II Data Sets

Sequel II System 2.0 Data Release (Chemistry v2.0, SMRT Link v8.0)

• 16S Data Set
• Microbial Multiplexing Data Set 48 plex (15 microbial isolates acquired from ATCC)

Sequel II System Data Release (Chemistry v1.0, SMRT Link v7.0)

SNVs and SVs Calling Data Set with HiFi reads (HiFi reads powered by CCS) - PacBio Sequel II System, Chemistry 1.0, Analysis SMRT Link Early Access v6.1.0

• HG002 SV and SNVs Analysis (CCS)

Structural Variant Calling Data Set with CLR (Continuous Long Reads) - PacBio Sequel II System, Chemistry 1.0, Analysis SMRT Link Early Access v6.1.0

• HG002 SV Analysis (CLR)

Iso-Seq Data Set - PacBio Sequel II System, Chemistry 1.0, Analysis SMRT Link v7.0.0

• Universal Human Reference (UHR) Data Set - Iso-Seq

Sequel Data Sets

Melanoma Cancer Cell Line Iso-Seq Data - PacBio Sequel System, Iso-Seq Express Template Preparation, Chemistry v3.0, SMRT Link v7.0 Analysis

• Melanoma Cancer Cell Line Iso Seq Data

Structural Variant Calling Data Set - PacBio Sequel System,Chemistry v3.0, SMRT Link v6.0.0 Analysis

• Sequel System Data Release: Structural Variant Calling in SMRT Link v6.0.0

Genome In A Bottle (GIAB)

• Human Genomes sequenced on PacBio Platforms

Microbial Multiplexing Data Set - PacBio Sequel System, Chemistry - v3.0, Analysis - SMRT Link v6.0.0

• Sequel System Data Release: Sequencing and analysis data for a 10-plex microbial data set, Chemistry - v3.0, Analysis - SMRT Link v6.0.0

Microbial Multiplexing Data Set - PacBio Sequel System, Chemistry - v2.1, Analysis - SMRT Link v5.1.0

• Sequel System Data Release: Sequencing and analysis data for a 10-plex microbial data set, Chemistry - v2.1, Analysis - SMRT Link v5.1.0

PacBio Sequel Data v2 Chemistry, SMRT Link v5.0.1 Analysis

• Sequel System Data Release: Iso-Seq Results for Hummingbird and Zebra Finch Brain Tissue

Alzheimer’s Disease Capture Panel

• Alzheimer’s Disease Capture Panel Data Release

PacBio Sequel Data

• Arabidopsis Sequence and Assembly
• Multiplexed Microbial Assembly (8-plex E. coli)

• FLT3 Internal Tandem Duplication (ITD)
• Murray et al, The Methylomes of Six Bacteria Nucleic Acids Res. 2012 Dec
• Schadt et al, Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases Genome Res. 2012
• E. coli, M. ruber and P. heparinus with assemblies using HGAP beta implementation

• PacBio list of methylomes at REBASE

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