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Diebrate/population_model: PhD project related to mean field game/control and optimal transport

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README

Modeling Single Cell Trajectory Using Forward-Backward Stochastic Differential Equations

Research Project by Kevin Zhang Preprint paper avaiable on bioarxiv

numpy
pandas
sklearn
matplotlib
seaborn
pytorch
pot

The repository is able to train 4 different models.

TrajectoryNet by (Tong, 2020)
Waddingtong-OT by (Schiebinger, 2019)
Stationary-OT by (Zhang, 2021)
FBSDE (preprint)

To train the model, run the workflow_single.py file. To perform parameter tuning using validation, run the workflow_valid.py file. To summarize the performance from simulations, run the workflow_eval.py file.

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PhD project related to mean field game/control and optimal transport

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