scider implements functions to analyse spatial transcriptomics data with cell type annotations by performing cell type correlation via density estimation and cell type co-localization via real number distance. Functions include density estimation, statistical modelling and visualizations.
Install released version form Bioconductor
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scider")
Install development version from GitHub
library(devtools)
devtools::install_github("ChenLaboratory/scider")
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