statgenIBD is an R package for calculating Identity By Descent (IBD) probabilities for biparental, three and four-way crosses. Calculations are based on Hidden Markov Models (HMM) and inheritance vectors. The HMM calculations are implemented in Rcpp/C++.
For more complicated pedigrees RABBIT can be used to calculate the IBDs.
install.packages("statgenIBD")
remotes::install_github("Biometris/statgenIBD", ref = "develop", dependencies = TRUE)
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