Multi-caller variant analysis pipeline for targeted analysis sequencing (TAS) data. Features a modular, automated workflow that can start with raw reads and produces a user-friendly PDF summary and a spreadsheet containing consensus variant information.
Version: 0.0.2 Imports: stringr, dplyr, yaml, openxlsx, VennDiagram, assertthat, magrittr, tools, utils, tidyr, doParallel, foreach Suggests: testthat, knitr, rmarkdown, futile.logger Published: 2020-11-14 DOI: 10.32614/CRAN.package.varitas Author: Adam Mills [aut, cre], Erle Holgersen [aut], Ros Cutts [aut], Syed Haider [aut] Maintainer: Adam Mills <Adam.Mills at icr.ac.uk> License: GPL-2 NeedsCompilation: no SystemRequirements: perl, bedtools (>=2.27.1), bwa Materials: NEWS CRAN checks: varitas results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=varitas to link to this page.
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