Generates cell-level cytokine activity estimates using relevant information from gene sets constructed with the 'CytoSig' and the 'Reactome' databases and scored using the modified 'Variance-adjusted Mahalanobis (VAM)' framework for single-cell RNA-sequencing (scRNA-seq) data. 'CytoSig' database is described in: Jiang at al., (2021) <doi:10.1038/s41592-021-01274-5>. 'Reactome' database is described in: Gillespie et al., (2021) <doi:10.1093/nar/gkab1028>. The 'VAM' method is outlined in: Frost (2020) <doi:10.1093/nar/gkaa582>.
Version: 0.2.0 Depends: R (≥ 3.5.0) Imports: magrittr, xml2, stringr, dplyr, Seurat, SeuratObject, VAM, utils Suggests: knitr, pheatmap, rmarkdown, usethis Published: 2025-04-16 DOI: 10.32614/CRAN.package.scaper Author: H. Robert Frost [aut], Azka Javaid [aut, cre] Maintainer: Azka Javaid <azka.javaid.gr at dartmouth.edu> License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] NeedsCompilation: no CRAN checks: scaper results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=scaper to link to this page.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4