A collection of utilities and 'ggplot2' extensions to assist with visualisations in genomic epidemiology. This includes the 'phylepic' chart, a visual combination of a phylogenetic tree and a matched epidemic curve. The included 'ggplot2' extensions such as date axes binned by week are relevant for other applications in epidemiology and beyond. The approach is described in Suster et al. (2024) <doi:10.1101/2024.04.02.24305229>.
Version: 0.2.0 Imports: ape, cli, cowplot, dplyr, forcats, ggnewscale, ggplot2 (≥ 3.5.0), ggraph, igraph, rlang, scales, tidygraph, vctrs Suggests: knitr, rmarkdown, testthat (≥ 3.0.0) Published: 2024-05-31 DOI: 10.32614/CRAN.package.phylepic Author: Carl Suster [aut, cre], Western Sydney Local Health District, NSW Health [cph] Maintainer: Carl Suster <Carl.Suster at health.nsw.gov.au> BugReports: https://github.com/cidm-ph/phylepic/issues License: MIT + file LICENSE Copyright: see file COPYRIGHTS URL: https://github.com/cidm-ph/phylepic, https://cidm-ph.github.io/phylepic/ NeedsCompilation: no Citation: phylepic citation info Materials: README NEWS In views: Epidemiology CRAN checks: phylepic results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=phylepic to link to this page.
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