Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.
Version: 0.6.1 Depends: R (≥ 4.2) Imports: assertthat, ccaPP, dplyr, purrr, rlang, tibble, tidyr Suggests: covr, knitr, rmarkdown, testthat Published: 2025-05-05 DOI: 10.32614/CRAN.package.nanostringr Author: Derek Chiu [aut, cre], Aline Talhouk [aut], Samuel Leung [aut] Maintainer: Derek Chiu <dchiu at bccrc.ca> BugReports: https://github.com/TalhoukLab/nanostringr/issues License: MIT + file LICENSE URL: https://github.com/TalhoukLab/nanostringr/, https://talhouklab.github.io/nanostringr/ NeedsCompilation: no Citation: nanostringr citation info Materials: NEWS In views: Omics CRAN checks: nanostringr results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=nanostringr to link to this page.
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