Methods and tools for the analysis of Genome Wide Identity-by-Descent ('gwid') mapping data, focusing on testing whether there is a higher occurrence of Identity-By-Descent (IBD) segments around potential causal variants in cases compared to controls, which is crucial for identifying rare variants. To enhance its analytical power, 'gwid' incorporates a Sliding Window Approach, allowing for the detection and analysis of signals from multiple Single Nucleotide Polymorphisms (SNPs).
Version: 0.3.0 Imports: data.table, gdsfmt, SNPRelate, Matrix, ggplot2, plotly, utils, stats, RcppRoll, methods, piggyback, shiny, lattice, grid Suggests: knitr, magrittr, rmarkdown, testthat (≥ 3.0.0) Published: 2024-09-03 DOI: 10.32614/CRAN.package.gwid Author: Soroush Mahmoudiandehkordi [aut, cre], Steven J Schrodi [aut], Mehdi Maadooliat [aut] Maintainer: Soroush Mahmoudiandehkordi <soroushmdg at gmail.com> BugReports: https://github.com/soroushmdg/gwid/issues License: MIT + file LICENSE URL: https://github.com/soroushmdg/gwid, https://soroushmdg.github.io/gwid/ NeedsCompilation: no Materials: README NEWS CRAN checks: gwid results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=gwid to link to this page.
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