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CRAN: Package cophescan

A Bayesian method for Phenome-wide association studies (PheWAS) that identifies causal associations between genetic variants and traits, while simultaneously addressing confounding due to linkage disequilibrium. For details see Manipur et al (2023) <doi:10.1101/2023.06.29.546856>.

Version: 1.4.1 Depends: R (≥ 3.5.0) Imports: Rcpp (≥ 1.0.7), coloc, data.table, ggplot2, ggrepel, pheatmap, methods, viridis, stats, grDevices, magrittr, utils, matrixStats, dplyr LinkingTo: Rcpp, RcppArmadillo Suggests: knitr, testthat (≥ 3.0.0), rmarkdown, RColorBrewer, ggpubr Published: 2024-06-11 DOI: 10.32614/CRAN.package.cophescan Author: Ichcha Manipur [aut, cre], Chris Wallace [aut] Maintainer: Ichcha Manipur <im504 at cam.ac.uk> BugReports: https://github.com/ichcha-m/cophescan/issues License: GPL-3 URL: https://github.com/ichcha-m/cophescan, https://ichcha-m.github.io/cophescan/ NeedsCompilation: yes Citation: cophescan citation info Materials: README NEWS CRAN checks: cophescan results

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