Methods for analyzing (cell) motion in two or three dimensions. Available measures include displacement, confinement ratio, autocorrelation, straightness, turning angle, and fractal dimension. Measures can be applied to entire tracks, steps, or subtracks with varying length. While the methodology has been developed for cell trajectory analysis, it is applicable to anything that moves including animals, people, or vehicles. Some of the methodology implemented in this packages was described by: Beauchemin, Dixit, and Perelson (2007) <doi:10.4049/jimmunol.178.9.5505>, Beltman, Maree, and de Boer (2009) <doi:10.1038/nri2638>, Gneiting and Schlather (2004) <doi:10.1137/S0036144501394387>, Mokhtari, Mech, Zitzmann, Hasenberg, Gunzer, and Figge (2013) <doi:10.1371/journal.pone.0080808>, Moreau, Lemaitre, Terriac, Azar, Piel, Lennon-Dumenil, and Bousso (2012) <doi:10.1016/j.immuni.2012.05.014>, Textor, Peixoto, Henrickson, Sinn, von Andrian, and Westermann (2011) <doi:10.1073/pnas.1102288108>, Textor, Sinn, and de Boer (2013) <doi:10.1186/1471-2105-14-S6-S10>, Textor, Henrickson, Mandl, von Andrian, Westermann, de Boer, and Beltman (2014) <doi:10.1371/journal.pcbi.1003752>.
Version: 1.2.1 Depends: R (≥ 3.5.0) Imports: stats, grDevices, graphics, utils, ellipse, pracma, methods Suggests: scatterplot3d, fractaldim, testthat, wordspace, knitr, rmarkdown, RSpectra, uwot, dendextend, ggplot2, ggbeeswarm, gridExtra, mvtnorm, jsonlite, httr, curl Published: 2024-08-26 DOI: 10.32614/CRAN.package.celltrackR Author: Johannes Textor [aut, cre], Katharina Dannenberg [aut], Jeffrey Berry [aut], Gerhard Burger [aut], Annie Liu [aut], Mark Miller [aut], Inge Wortel [aut] Maintainer: Johannes Textor <johannes.textor at gmx.de> License: GPL-2 URL: http://www.motilitylab.net NeedsCompilation: no Citation: celltrackR citation info Materials: NEWS CRAN checks: celltrackR results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=celltrackR to link to this page.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4