Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.
Version: 1.1.3 Depends: R (≥ 3.0) Imports: testthat (≥ 3.0.0), VennDiagram (≥ 1.6.4), data.table (≥ 1.8.11), R.utils (≥ 2.0.2), yaml (≥ 2.1.10), parallel, grid Suggests: knitr (≥ 1.4), rmarkdown (≥ 0.9.5) Published: 2025-04-06 DOI: 10.32614/CRAN.package.bedr Author: Syed Haider [aut], Daryl Waggott [aut], Emilie Lalonde [ctb], Clement Fung [ctb], Helena Winata [ctb], Dan Knight [ctb], Michael Chirico [ctb], Melinda Luo [ctb], Paul C. Boutros [aut, cre, cph] Maintainer: Paul C. Boutros <pboutros at mednet.ucla.edu> BugReports: https://github.com/uclahs-cds/package-bedr/issues License: GPL-2 URL: https://github.com/uclahs-cds/package-bedr NeedsCompilation: no SystemRequirements: Preferred genomic operations engine: 'BEDTools', 'BEDOPS' and 'Tabix (>= 1.3)'. Materials: NEWS CRAN checks: bedr resultsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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