It brings together several aspects of biodiversity data-cleaning in one place. 'bdc' is organized in thematic modules related to different biodiversity dimensions, including 1) Merge datasets: standardization and integration of different datasets; 2) Pre-filter: flagging and removal of invalid or non-interpretable information, followed by data amendments; 3) Taxonomy: cleaning, parsing, and harmonization of scientific names from several taxonomic groups against taxonomic databases locally stored through the application of exact and partial matching algorithms; 4) Space: flagging of erroneous, suspect, and low-precision geographic coordinates; and 5) Time: flagging and, whenever possible, correction of inconsistent collection date. In addition, it contains features to visualize, document, and report data quality â which is essential for making data quality assessment transparent and reproducible. The reference for the methodology is Bruno et al. (2022) <doi:10.1111/2041-210X.13868>.
Version: 1.1.5 Imports: CoordinateCleaner, doParallel, dplyr, DT, foreach, fs, ggplot2, here, magrittr, purrr, qs, readr, rgnparser, rnaturalearth, sf (≥ 1.0.5), stringdist, stringi, stringr, taxadb (≥ 0.1.3), tibble, tidyselect Suggests: contentid (≥ 0.0.15), covr, cowplot, DBI, duckdb (≥ 0.3.2), knitr (≥ 1.31), maps, markdown, rappdirs, raster, remotes, rlang (≥ 1.0.1), rmarkdown, rnaturalearthdata, sp, rvest, xml2, testthat (≥ 3.0.0) Published: 2024-12-17 DOI: 10.32614/CRAN.package.bdc Author: Bruno Ribeiro [aut, cre], Santiago Velazco [aut], Karlo Guidoni-Martins [aut], Geiziane Tessarolo [aut], Lucas Jardim [aut], Steven Bachman [ctb], Rafael Loyola [ctb] Maintainer: Bruno Ribeiro <ribeiro.brr at gmail.com> BugReports: https://github.com/brunobrr/bdc/issues License: GPL (≥ 3) URL: https://brunobrr.github.io/bdc/ (website) https://github.com/brunobrr/bdc NeedsCompilation: no Language: en-gb Materials: README NEWS CRAN checks: bdc results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=bdc to link to this page.
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