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CRAN: Package WayFindR

WayFindR: Computing Graph Structures on WikiPathways

Converts pathways from 'WikiPathways' GPML format or 'KEGG' KGML format into 'igraph' objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition).

Version: 0.3.1 Depends: R (≥ 3.5) Imports: graphics, utils, XML, igraph, KEGGREST, PubChemR (≥ 2.0), AnnotationDbi, org.Hs.eg.db, DescTools, Rgraphviz Suggests: knitr, rmarkdown, Polychrome Published: 2025-04-09 DOI: 10.32614/CRAN.package.WayFindR Author: Kevin R. Coombes [aut, cre], Polina Bombina [aut] Maintainer: Kevin R. Coombes <krc at silicovore.com> License: Artistic-2.0 URL: http://oompa.r-forge.r-project.org/ NeedsCompilation: no CRAN checks: WayFindR results Documentation: Downloads: Linking:

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