Facilitate the description, transformation, exploration, and reproducibility of metabarcoding analyses. 'MiscMetabar' is mainly built on top of the 'phyloseq', 'dada2' and 'targets' R packages. It helps to build reproducible and robust bioinformatics pipelines in R. 'MiscMetabar' makes ecological analysis of alpha and beta-diversity easier, more reproducible and more powerful by integrating a large number of tools. Important features are described in Taudière A. (2023) <doi:10.21105/joss.06038>.
Version: 0.14.3 Depends: R (≥ 4.1.0), phyloseq, ggplot2 (≥ 3.5.0), dada2, dplyr, purrr Imports: ape, lifecycle, rlang, stats Suggests: adespatial, ANCOMBC, BiocManager, Biostrings, circlize, ComplexUpset, DECIPHER, DESeq2, devtools, DT, edgeR, formattable, ggalluvial, ggfittext, gghalves, ggh4x, ggstatsplot, ggridges, ggVennDiagram, glmulti, gtsummary, grDevices, grid, gridExtra, here, httr, iNEXT, indicspecies, IRanges, jsonlite, knitr, magrittr, methods, mia, mixtools, multcompView, networkD3, pak, patchwork, pbapply, permute, phangorn, phyloseqGraphTest, pkgnet, plotly, plyr, reshape2, rmarkdown, rotl, Rtsne, scales, seqinr, SRS, stringr, SummarizedExperiment, testthat (≥ 3.0.0), tibble, tidyr, treemapify, umap, uwot, vegan, venneuler, vctrs, viridis, withr, spelling Published: 2025-06-21 DOI: 10.32614/CRAN.package.MiscMetabar Author: Adrien Taudière [aut, cre, cph] Maintainer: Adrien Taudière <adrien.taudiere at zaclys.net> BugReports: https://github.com/adrientaudiere/MiscMetabar/issues License: AGPL-3 URL: https://github.com/adrientaudiere/MiscMetabar, https://adrientaudiere.github.io/MiscMetabar/ NeedsCompilation: no Language: en-US Materials: README NEWS CRAN checks: MiscMetabar results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=MiscMetabar to link to this page.
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