A 'shiny' application, which allows you to perform single- and multi-omics analyses using your own omics datasets. After the upload of the omics datasets and a metadata file, single-omics is performed for feature selection and dataset reduction. These datasets are used for pairwise- and multi-omics analyses, where automatic tuning is done to identify correlations between the datasets - the end goal of the recommended 'Holomics' workflow. Methods used in the package were implemented in the package 'mixomics' by Florian Rohart,Benoît Gautier,Amrit Singh,Kim-Anh Lê Cao (2017) <doi:10.1371/journal.pcbi.1005752> and are described there in further detail.
Version: 1.1.1 Depends: R (≥ 4.0) Imports: bs4Dash (≥ 2.0.2), config, dplyr, DT, ggplot2, golem, igraph, openxlsx, readxl, shiny (≥ 1.6.0), shinyalert, shinybusy, shinyjs, shinyvalidate, shinyWidgets, stringr, tippy, visNetwork, mixOmics, BiocParallel, markdown, ggrepel, matrixStats, RSpectra, reshape2, tidyr, uuid Suggests: bookdown, knitr, rmarkdown, badger Published: 2024-06-07 DOI: 10.32614/CRAN.package.Holomics Author: Katharina Munk [aut, cre], Eva M. Molin [aut, ctb], Günter Brader [ctb], Lisa Ziemba [ctb], AIT Austrian Institute of Technology GmbH [cph] Maintainer: Katharina Munk <katharinamunk at yahoo.de> BugReports: https://github.com/MolinLab/Holomics/issues License: GPL (≥ 3) URL: https://github.com/MolinLab/Holomics NeedsCompilation: no Language: en-US Citation: Holomics citation info Materials: README NEWS CRAN checks: Holomics results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=Holomics to link to this page.
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