The 'ESTIMATE' package infers tumor purity from expression data as a function of immune and stromal infiltrate, but requires writing of intermediate files, is un-pipeable, and performs poorly when presented with modern datasets with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of 'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.
Version: 1.1.1 Depends: R (≥ 4.1.0) Imports: glue, dplyr, stats, rlang, ggrepel, ggplot2 Suggests: rmarkdown, knitr Published: 2023-08-21 DOI: 10.32614/CRAN.package.tidyestimate Author: Kai Aragaki [aut, cre], Paul Roebuck [cph] (Copyright holder of ESTIMATE package), Kosuke Yoshihara [aut] (Author of original ESTIMATE algorithm), Rahulsimham Vegesna [aut] (Author of original ESTIMATE algorithm), Hoon Kim [aut] (Author of original ESTIMATE algorithm), Roel Verhaak [aut] (Author of original ESTIMATE algorithm) Maintainer: Kai Aragaki <aaragak1 at jhmi.edu> BugReports: https://github.com/KaiAragaki/tidyestimate/issues License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] Copyright: see file COPYRIGHTS URL: https://github.com/KaiAragaki/tidyestimate NeedsCompilation: no Materials: README NEWS In views: Omics CRAN checks: tidyestimate results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=tidyestimate to link to this page.
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