Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.
Version: 1.1.2 Depends: R (≥ 3.1.0) Imports: reshape2, plyr, dplyr, data.table, ggplot2, Cairo Suggests: testthat Published: 2018-06-18 DOI: 10.32614/CRAN.package.MetaComp Author: Pavel Senin [aut, cre] Maintainer: Pavel Senin <senin at hawaii.edu> BugReports: https://github.com/seninp-bioinfo/MetaComp/issues License: GPL-2 URL: https://github.com/seninp-bioinfo/MetaComp NeedsCompilation: no Materials: README CRAN checks: MetaComp results Documentation: Reference manual: MetaComp.pdf Downloads: Package source: MetaComp_1.1.2.tar.gz Windows binaries: r-devel: MetaComp_1.1.2.zip, r-release: MetaComp_1.1.2.zip, r-oldrel: MetaComp_1.1.2.zip macOS binaries: r-release (arm64): MetaComp_1.1.2.tgz, r-oldrel (arm64): MetaComp_1.1.2.tgz, r-release (x86_64): MetaComp_1.1.2.tgz, r-oldrel (x86_64): MetaComp_1.1.2.tgz Old sources: MetaComp archive Linking:Please use the canonical form https://CRAN.R-project.org/package=MetaComp to link to this page.
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