Runs a Shiny web application that merges raw 'qPCR' fluorescence data with related metadata to visualize species presence/absence detection patterns and assess data quality. The application calculates threshold values from raw fluorescence data using a method based on the second derivative method, Luu-The et al (2005) <doi:10.2144/05382RR05>, and utilizes the âchipPCRâ package by Rödiger, Burdukiewicz, & Schierack (2015) <doi:10.1093/bioinformatics/btv205> to calculate Cq values. The application has the ability to connect to a custom developed MySQL database to populate the applications interface. The application allows users to interact with visualizations such as a dynamic map, amplification curves and standard curves, that allow for zooming and/or filtering. It also enables the generation of customized exportable reports based on filtered mapping data.
Version: 0.2.3 Imports: RMySQL, shinydashboard, DBI, DT, leaflet, leaflet.extras, shinyjs, ggplot2, dplyr, readxl, plotly, reactable, writexl, xfun, berryFunctions, shinyWidgets, shiny, htmltools, methods, utils, stats, bslib, htmlwidgets Published: 2021-06-23 DOI: 10.32614/CRAN.package.MDMAPR Author: Alka Benawra Maintainer: Alka Benawra <alkabenawra at rogers.com> BugReports: https://github.com/HannerLab/MDMAPR/issues License: GPL-3 URL: https://github.com/HannerLab/MDMAPR NeedsCompilation: no Materials: README CRAN checks: MDMAPR results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=MDMAPR to link to this page.
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