A collection of methods to extract gene programs from single-cell gene expression data using non-negative matrix factorization (NMF). 'GeneNMF' contains functions to directly interact with the 'Seurat' toolkit and derive interpretable gene program signatures.
Version: 0.8.0 Depends: R (≥ 4.3.0) Imports: RcppML, Matrix, stats, methods, utils, Seurat (≥ 4.3.0), cluster, lsa, irlba, pheatmap, dendextend, viridis Suggests: knitr, rmarkdown, fgsea, msigdbr Published: 2025-04-24 DOI: 10.32614/CRAN.package.GeneNMF Author: Massimo Andreatta [aut, cre], Santiago Carmona [aut] Maintainer: Massimo Andreatta <massimo.andreatta at unige.ch> BugReports: https://github.com/carmonalab/GeneNMF/issues License: GPL-3 URL: https://github.com/carmonalab/GeneNMF NeedsCompilation: no Materials: README NEWS CRAN checks: GeneNMF resultsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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