Contains a number of comparative 'phylogenetic' methods, mostly focusing on analysing diversification and character evolution. Contains implementations of 'BiSSE' (Binary State 'Speciation' and Extinction) and its unresolved tree extensions, 'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE', 'GeoSSE', and 'BiSSE-ness' Other included methods include Markov models of discrete and continuous trait evolution and constant rate 'speciation' and extinction.
Version: 0.10-1 Depends: R (≥ 2.10), methods, ape Imports: deSolve (≥ 1.7), graphics, grDevices, stats, subplex, Rcpp (≥ 0.10.0) LinkingTo: Rcpp Suggests: numDeriv, minqa, lubridate, expm, caper, geiger Published: 2024-10-02 DOI: 10.32614/CRAN.package.diversitree Author: Richard G. FitzJohn [aut, cre], Emma Goldberg [aut], Karen Magnuson-Ford [aut], Roger Sidje [aut] Maintainer: Richard G. FitzJohn <rich.fitzjohn at gmail.com> License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] URL: https://www.zoology.ubc.ca/prog/diversitree/ NeedsCompilation: yes SystemRequirements: fftw3 (>= 3.1.2), gsl (>= 1.15) Citation: diversitree citation info Materials: README ChangeLog In views: Phylogenetics CRAN checks: diversitree results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=diversitree to link to this page.
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