Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>, Castanza et al. 2023 <doi:10.1038/s41592-023-02014-7>) as an R data frame. The package includes the human genes as listed in MSigDB as well as the corresponding symbols and IDs for frequently studied model organisms such as mouse, rat, pig, fly, and yeast.
Version: 25.1.0 Depends: R (≥ 4.1) Imports: assertthat, babelgene (≥ 22.9), curl, dplyr (≥ 1.1.1), lifecycle, methods, rlang, tibble, tidyselect (≥ 1.2.0), tools Suggests: knitr, rmarkdown, roxygen2, testthat Published: 2025-07-03 DOI: 10.32614/CRAN.package.msigdbr Author: Igor Dolgalev [aut, cre] Maintainer: Igor Dolgalev <igor.dolgalev at nyumc.org> BugReports: https://github.com/igordot/msigdbr/issues License: MIT + file LICENSE URL: https://igordot.github.io/msigdbr/ NeedsCompilation: no Materials: README NEWS In views: Omics CRAN checks: msigdbr results [issues need fixing before 2025-07-20] Documentation: Downloads: Reverse dependencies: Reverse depends: GSDA Reverse imports: AutoPipe, CatsCradle, ChromSCape, hypeR, netgsa, pairedGSEA, pathfindR, POMA, projectR, ReducedExperiment, RVA, scFeatures, scITD, scTGIF, singleCellTK, zenith Reverse suggests: CRISPRball, EnrichmentBrowser, fgsea, gCrisprTools, GeneNMF, GenomicSuperSignature, grandR, OlinkAnalyze, PDATK, Platypus, rGREAT, sparrow, spatialGE, tidybulk Linking:Please use the canonical form https://CRAN.R-project.org/package=msigdbr to link to this page.
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