A collection of functions related to novel methods for estimating R(t), created by the lab of Professor Laura White. Currently implemented methods include two-step Bayesian back-calculation and now-casting for line-list data with missing reporting delays, adapted in 'STAN' from Li (2021) <doi:10.1371/journal.pcbi.1009210>, and calculation of time-varying reproduction number assuming a flux between various adjacent states, adapted into 'STAN' from Zhou (2021) <doi:10.1371/journal.pcbi.1010434>.
Version: 1.0.1 Depends: R (≥ 3.4.0) Imports: methods, Rcpp (≥ 0.12.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), rstantools (≥ 2.4.0) LinkingTo: BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), StanHeaders (≥ 2.18.0) Suggests: knitr, rmarkdown Published: 2024-08-16 DOI: 10.32614/CRAN.package.WhiteLabRt Author: Chad Milando [aut, cre], Tenglong Li [ctb], Zhenwei Zhou [ctb], Laura White [ctb] Maintainer: Chad Milando <cmilando at bu.edu> License: MIT + file LICENSE NeedsCompilation: yes SystemRequirements: GNU make Language: en-US Materials: README CRAN checks: WhiteLabRt results Documentation: Downloads: Linking:Please use the canonical form https://CRAN.R-project.org/package=WhiteLabRt to link to this page.
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