Tools to construct (or add to) cell-type signature matrices using flow sorted or single cell samples and deconvolve bulk gene expression data. Useful for assessing the quality of single cell RNAseq experiments, estimating the accuracy of signature matrices, and determining cell-type spillover. Please cite: Danziger SA et al. (2019) ADAPTS: Automated Deconvolution Augmentation of Profiles for Tissue Specific cells <doi:10.1371/journal.pone.0224693>.
Version: 1.0.22 Depends: R (≥ 3.3.0) Imports: missForest, e1071, ComICS, pheatmap, doParallel, utils, quantmod, preprocessCore, pcaMethods, foreach, nnls, ranger Suggests: R.rsp, DeconRNASeq, WGCNA Published: 2022-09-14 DOI: 10.32614/CRAN.package.ADAPTS Author: Samuel A Danziger Maintainer: Samuel A Danziger <sam.danziger at gmail.com> License: MIT + file LICENSE Copyright: Bristol-Myers Squibb NeedsCompilation: no Materials: README In views: Omics CRAN checks: ADAPTS results Documentation: Downloads: Reverse dependencies: Linking:Please use the canonical form https://CRAN.R-project.org/package=ADAPTS to link to this page.
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