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Bioconductor - MsBackendSql

MsBackendSql

This is the released version of MsBackendSql; for the devel version, see MsBackendSql.

SQL-based Mass Spectrometry Data Backend

Bioconductor version: Release (3.21)

SQL-based mass spectrometry (MS) data backend supporting also storange and handling of very large data sets. Objects from this package are supposed to be used with the Spectra Bioconductor package. Through the MsBackendSql with its minimal memory footprint, this package thus provides an alternative MS data representation for very large or remote MS data sets.

Author: Johannes Rainer [aut, cre] ORCID: 0000-0002-6977-7147 , Chong Tang [ctb], Laurent Gatto [ctb] ORCID: 0000-0002-1520-2268

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Citation (from within R, enter citation("MsBackendSql")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendSql")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendSql")
Storing Mass Spectrometry Data in SQL Databases HTML R Script Reference Manual PDF Details biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software Version 1.8.0 In Bioconductor since BioC 3.17 (R-4.3) (2 years) License Artistic-2.0 Depends R (>= 4.2.0), Spectra(>= 1.17.9) Imports BiocParallel, S4Vectors, methods, ProtGenerics(>= 1.35.3), DBI, MsCoreUtils, IRanges, data.table, progress, stringi, fastmatch, BiocGenerics System Requirements URL https://github.com/RforMassSpectrometry/MsBackendSql Bug Reports https://github.com/RforMassSpectrometry/MsBackendSql/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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