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Bioconductor - MsCoreUtils

MsCoreUtils

This is the released version of MsCoreUtils; for the devel version, see MsCoreUtils.

Core Utils for Mass Spectrometry Data

Bioconductor version: Release (3.21)

MsCoreUtils defines low-level functions for mass spectrometry data and is independent of any high-level data structures. These functions include mass spectra processing functions (noise estimation, smoothing, binning, baseline estimation), quantitative aggregation functions (median polish, robust summarisation, ...), missing data imputation, data normalisation (quantiles, vsn, ...), misc helper functions, that are used across high-level data structure within the R for Mass Spectrometry packages.

Author: RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut] ORCID: 0000-0002-1520-2268 , Johannes Rainer [aut] ORCID: 0000-0002-6977-7147 , Sebastian Gibb [aut] ORCID: 0000-0001-7406-4443 , Philippine Louail [aut] ORCID: 0009-0007-5429-6846 , Adriaan Sticker [ctb], Sigurdur Smarason [ctb], Thomas Naake [ctb], Josep Maria Badia Aparicio [ctb] ORCID: 0000-0002-5704-1124 , Michael Witting [ctb] ORCID: 0000-0002-1462-4426 , Samuel Wieczorek [ctb], Roger Gine Bertomeu [ctb] ORCID: 0000-0003-0288-9619 , Mar Garcia-Aloy [ctb] ORCID: 0000-0002-1330-6610

Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>

Citation (from within R, enter citation("MsCoreUtils")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsCoreUtils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsCoreUtils")
Details See More Suggests testthat, knitr, BiocStyle, rmarkdown, roxygen2, imputeLCMD, impute, norm, pcaMethods, vsn, Matrix, preprocessCore, missForest Linking To Rcpp Enhances HDF5Array Depends On Me Imports Me CompoundDb, hdxmsqc, MetaboAnnotation, MetaboCoreUtils, MetCirc, MsBackendMassbank, MsBackendMgf, MsBackendMsp, MsBackendRawFileReader, MsBackendSql, MsFeatures, MSnbase, PSMatch, QFeatures, qmtools, scp, Spectra, SpectraQL, xcms Suggests Me MetNet, msqrob2 Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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