This is the released version of scTreeViz; for the devel version, see scTreeViz.
R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotationsBioconductor version: Release (3.21)
scTreeViz provides classes to support interactive data aggregation and visualization of single cell RNA-seq datasets with hierarchies for e.g. cell clusters at different resolutions. The `TreeIndex` class provides methods to manage hierarchy and split the tree at a given resolution or across resolutions. The `TreeViz` class extends `SummarizedExperiment` and can performs quick aggregations on the count matrix defined by clusters.
Author: Jayaram Kancherla [aut, cre], Hector Corrada Bravo [aut], Kazi Tasnim Zinat [aut], Stephanie Hicks [aut]
Maintainer: Jayaram Kancherla <jayaram.kancherla at gmail.com>
Citation (from within R, entercitation("scTreeViz")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scTreeViz")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scTreeViz")Follow Installation instructions to use this package in your R session.
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