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riboSeqR

This is the released version of riboSeqR; for the devel version, see riboSeqR.

Analysis of sequencing data from ribosome profiling experiments

Bioconductor version: Release (3.21)

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Author: Thomas J. Hardcastle [aut], Samuel Granjeaud [cre] ORCID: 0000-0001-9245-1535

Maintainer: Samuel Granjeaud <samuel.granjeaud at inserm.fr>

Citation (from within R, enter citation("riboSeqR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("riboSeqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("riboSeqR")

Details biocViews Genetics, RiboSeq, Sequencing, Software, Visualization Version 1.42.0 In Bioconductor since BioC 3.0 (R-3.1) (10.5 years) License GPL-3 Depends R (>= 3.0.2), methods, GenomicRanges, abind Imports Rsamtools, IRanges, S4Vectors, baySeq, GenomeInfoDb, seqLogo System Requirements URL https://github.com/samgg/riboSeqR Bug Reports https://github.com/samgg/riboSeqR/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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