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Bioconductor - rfaRm

rfaRm

This is the released version of rfaRm; for the devel version, see rfaRm.

An R interface to the Rfam database

Bioconductor version: Release (3.21)

rfaRm provides a client interface to the Rfam database of RNA families. Data that can be retrieved include RNA families, secondary structure images, covariance models, sequences within each family, alignments leading to the identification of a family and secondary structures in the dot-bracket format.

Author: Lara Selles Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro

Maintainer: Lara Selles Vidal <lara.selles at oist.jp>, Rafael Ayala <rafael.ayala at oist.jp>

Citation (from within R, enter citation("rfaRm")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rfaRm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rfaRm")
Details biocViews DataImport, FunctionalGenomics, MultipleSequenceAlignment, Software, ThirdPartyClient, Visualization Version 1.20.0 In Bioconductor since BioC 3.11 (R-4.0) (5 years) License GPL-3 Depends Imports httr, stringi, rsvg, magick, data.table, Biostrings, utils, rvest, xml2, IRanges, S4Vectors, jsonlite System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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