This is the released version of methylCC; for the devel version, see methylCC.
Estimate the cell composition of whole blood in DNA methylation samplesBioconductor version: Release (3.21)
A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).
Author: Stephanie C. Hicks [aut, cre] ORCID: 0000-0002-7858-0231 , Rafael Irizarry [aut] ORCID: 0000-0002-3944-4309
Maintainer: Stephanie C. Hicks <shicks19 at jhu.edu>
Citation (from within R, entercitation("methylCC")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("methylCC")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("methylCC")
Details biocViews DNAMethylation, MethylSeq, MethylationArray, Microarray, Sequencing, Software, WholeGenome Version 1.22.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License GPL-3 Depends R (>= 3.6), FlowSorted.Blood.450k Imports Biobase, GenomicRanges, IRanges, S4Vectors, dplyr, magrittr, minfi, bsseq, quadprog, plyranges, stats, utils, bumphunter, genefilter, methods, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19 System Requirements URL https://github.com/stephaniehicks/methylCC/ Bug Reports https://github.com/stephaniehicks/methylCC/ See More Package Archives
Follow Installation instructions to use this package in your R session.
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