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Bioconductor - chipseq

chipseq

This is the released version of chipseq; for the devel version, see chipseq.

chipseq: A package for analyzing chipseq data

Bioconductor version: Release (3.21)

Tools for helping process short read data for chipseq experiments.

Author: Deepayan Sarkar [aut], Robert Gentleman [aut], Michael Lawrence [aut], Zizhen Yao [aut], Oluwabukola Bamigbade [ctb] (Converted vignette from Sweave to R Markdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("chipseq")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chipseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chipseq")

Details biocViews ChIPSeq, Coverage, DataImport, QualityControl, Sequencing, Software Version 1.58.0 In Bioconductor since BioC 2.5 (R-2.10) (15.5 years) License Artistic-2.0 Depends R (>= 3.5.0), methods, BiocGenerics(>= 0.1.0), S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), GenomicRanges(>= 1.31.8), ShortRead Imports methods, stats, lattice, BiocGenerics, IRanges, GenomicRanges, ShortRead System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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