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bnbc

This is the released version of bnbc; for the devel version, see bnbc.

Bandwise normalization and batch correction of Hi-C data

Bioconductor version: Release (3.21)

Tools to normalize (several) Hi-C data from replicates.

Author: Kipper Fletez-Brant [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Kipper Fletez-Brant <cafletezbrant at gmail.com>

Citation (from within R, enter citation("bnbc")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bnbc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bnbc")

Details biocViews HiC, Normalization, Preprocessing, Software Version 1.30.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License Artistic-2.0 Depends R (>= 3.5.0), methods, BiocGenerics, SummarizedExperiment, GenomicRanges Imports Rcpp (>= 0.12.12), IRanges, rhdf5, data.table, GenomeInfoDb, S4Vectors, matrixStats, preprocessCore, sva, parallel, EBImage, utils, HiCBricks System Requirements URL https://github.com/hansenlab/bnbc Bug Reports https://github.com/hansenlab/bnbc/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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