A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from https://bioconductor.org/packages/devel/bioc/html/simPIC.html below:

Bioconductor - simPIC (development version)

simPIC

This is the development version of simPIC; for the stable release version, see simPIC.

Flexible simulation of paired-insertion counts for single-cell ATAC-sequencing data

Bioconductor version: Development (3.22)

simPIC is a package for simulating single-cell ATAC-seq count data. It provides a user-friendly, well documented interface for data simulation. Functions are provided for parameter estimation, realistic scATAC-seq data simulation, and comparing real and simulated datasets.

Author: Sagrika Chugh [aut, cre] ORCID: 0000-0002-8050-5214 , Heejung Shim [aut], Davis McCarthy [aut]

Maintainer: Sagrika Chugh <sagrika.chugh at gmail.com>

Citation (from within R, enter citation("simPIC")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("simPIC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("simPIC")
Details biocViews ATACSeq, DataImport, ImmunoOncology, Sequencing, SingleCell, Software Version 1.5.3 In Bioconductor since BioC 3.19 (R-4.4) (1 year) License GPL-3 Depends R (>= 4.5.0), SingleCellExperiment Imports BiocGenerics, checkmate (>= 2.0.0), fitdistrplus, matrixStats, actuar, Matrix, stats, SummarizedExperiment, rlang, S4Vectors, methods, scales, scuttle, edgeR, withr System Requirements URL https://github.com/sagrikachugh/simPIC Bug Reports https://github.com/sagrikachugh/simPIC/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4