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Bioconductor - msgbsR (development version)

msgbsR

This is the development version of msgbsR; for the stable release version, see msgbsR.

msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions

Bioconductor version: Development (3.22)

Pipeline for the anaysis of a MS-GBS experiment.

Author: Benjamin Mayne

Maintainer: Benjamin Mayne <benjamin.mayne at adelaide.edu.au>

Citation (from within R, enter citation("msgbsR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("msgbsR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msgbsR")
Details biocViews DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Software Version 1.33.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License GPL-2 Depends R (>= 3.5.0), GenomicRanges, methods Imports BSgenome, easyRNASeq, edgeR, GenomicAlignments, GenomicFeatures, GenomeInfoDb, ggbio, ggplot2, IRanges, parallel, plyr, Rsamtools, R.utils, stats, SummarizedExperiment, S4Vectors, utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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