This is the development version of lute; for the stable release version, see lute.
Framework for cell size scale factor normalized bulk transcriptomics deconvolution experimentsBioconductor version: Development (3.22)
Provides a framework for adjustment on cell type size when performing bulk transcripomics deconvolution. The main framework function provides a means of reference normalization using cell size scale factors. It allows for marker selection and deconvolution using non-negative least squares (NNLS) by default. The framework is extensible for other marker selection and deconvolution algorithms, and users may reuse the generics, methods, and classes for these when developing new algorithms.
Author: Sean K Maden [cre, aut] ORCID: 0000-0002-2212-4894 , Stephanie Hicks [aut] ORCID: 0000-0002-7858-0231
Maintainer: Sean K Maden <maden.sean at gmail.com>
Citation (from within R, entercitation("lute")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("lute")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("lute")Follow Installation instructions to use this package in your R session.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4