This is the development version of TDbasedUFE; for the stable release version, see TDbasedUFE.
Tensor Decomposition Based Unsupervised Feature ExtractionBioconductor version: Development (3.22)
This is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. It can perform unsupervised feature extraction. It uses tensor decomposition. It is applicable to gene expression, DNA methylation, and histone modification etc. It can perform multiomics analysis. It is also potentially applicable to single cell omics data sets.
Author: Y-h. Taguchi [aut, cre] ORCID: 0000-0003-0867-8986
Maintainer: Y-h. Taguchi <tag at granular.com>
Citation (from within R, entercitation("TDbasedUFE")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TDbasedUFE")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TDbasedUFE")
Details biocViews FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software Version 1.9.0 In Bioconductor since BioC 3.17 (R-4.3) (2 years) License GPL-3 Depends Imports GenomicRanges, rTensor, readr, methods, MOFAdata, tximport, tximportData, graphics, stats, utils, shiny System Requirements URL https://github.com/tagtag/TDbasedUFE Bug Reports https://github.com/tagtag/TDbasedUFE/issues See More Package Archives
Follow Installation instructions to use this package in your R session.
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