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Bioconductor - SPLINTER (development version)

SPLINTER

This is the development version of SPLINTER; for the stable release version, see SPLINTER.

Splice Interpreter of Transcripts

Bioconductor version: Development (3.22)

Provides tools to analyze alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validiation and give visual representation of the event to guide downstream experiments.

Author: Diana Low [aut, cre]

Maintainer: Diana Low <lowdiana at gmail.com>

Citation (from within R, enter citation("SPLINTER")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SPLINTER")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SPLINTER")
Details biocViews AlternativeSplicing, GeneExpression, ImmunoOncology, RNASeq, Software, Visualization Version 1.35.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License GPL-2 Depends R (>= 3.6.0), grDevices, stats Imports graphics, ggplot2, seqLogo, Biostrings, pwalign, biomaRt, GenomicAlignments, GenomicRanges, GenomicFeatures, Gviz, IRanges, S4Vectors, GenomeInfoDb, utils, plyr, stringr, methods, BSgenome.Mmusculus.UCSC.mm9, googleVis System Requirements URL https://github.com/dianalow/SPLINTER/ Bug Reports https://github.com/dianalow/SPLINTER/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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