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Bioconductor - SEtools (development version)

SEtools

This is the development version of SEtools; for the stable release version, see SEtools.

SEtools: tools for working with SummarizedExperiment

Bioconductor version: Development (3.22)

This includes a set of convenience functions for working with the SummarizedExperiment class. Note that plotting functions historically in this package have been moved to the sechm package (see vignette for details).

Author: Pierre-Luc Germain [cre, aut] ORCID: 0000-0003-3418-4218

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Citation (from within R, enter citation("SEtools")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SEtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SEtools")
Details biocViews GeneExpression, Software Version 1.23.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License GPL Depends R (>= 4.0), SummarizedExperiment, sechm Imports BiocParallel, Matrix, DESeq2, S4Vectors, data.table, edgeR, openxlsx, pheatmap, stats, circlize, methods, sva System Requirements URL Bug Reports https://github.com/plger/SEtools See More Package Archives

Follow Installation instructions to use this package in your R session.

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