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Bioconductor - S4Arrays (development version)

S4Arrays

This is the development version of S4Arrays; for the stable release version, see S4Arrays.

Foundation of array-like containers in Bioconductor

Bioconductor version: Development (3.22)

The S4Arrays package defines the Array virtual class to be extended by other S4 classes that wish to implement a container with an array-like semantic. It also provides: (1) low-level functionality meant to help the developer of such container to implement basic operations like display, subsetting, or coercion of their array-like objects to an ordinary matrix or array, and (2) a framework that facilitates block processing of array-like objects (typically on-disk objects).

Author: Hervé Pagès [aut, cre] ORCID: 0009-0002-8272-4522 , Jacques Serizay [ctb]

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("S4Arrays")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("S4Arrays")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("S4Arrays")
Details See More Suggests BiocParallel, SparseArray(>= 0.0.4), DelayedArray, HDF5Array, testthat, knitr, rmarkdown, BiocStyle Linking To S4Vectors Enhances Depends On Me DelayedArray, SparseArray Imports Me alabaster.matrix, DelayedTensor, dreamlet, FLAMES, h5mread, HDF5Array, scran, scuttle, SummarizedExperiment Suggests Me BiocGenerics Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.


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