This is the development version of QSutils; for the stable release version, see QSutils.
Quasispecies DiversityBioconductor version: Development (3.22)
Set of utility functions for viral quasispecies analysis with NGS data. Most functions are equally useful for metagenomic studies. There are three main types: (1) data manipulation and explorationâfunctions useful for converting reads to haplotypes and frequencies, repairing reads, intersecting strand haplotypes, and visualizing haplotype alignments. (2) diversity indicesâfunctions to compute diversity and entropy, in which incidence, abundance, and functional indices are considered. (3) data simulationâfunctions useful for generating random viral quasispecies data.
Author: Mercedes Guerrero-Murillo [cre, aut] ORCID: 0000-0002-5556-2460 , Josep Gregori i Font [aut] ORCID: 0000-0002-4253-8015
Maintainer: Mercedes Guerrero-Murillo <mergumu at gmail.com>
Citation (from within R, entercitation("QSutils")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("QSutils")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("QSutils")Follow Installation instructions to use this package in your R session.
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