This is the development version of MAST; for the stable release version, see MAST.
Model-based Analysis of Single Cell TranscriptomicsBioconductor version: Development (3.22)
Methods and models for handling zero-inflated single cell assay data.
Author: Andrew McDavid [aut, cre], Greg Finak [aut], Masanao Yajima [aut]
Maintainer: Andrew McDavid <Andrew_McDavid at urmc.rochester.edu>
Citation (from within R, entercitation("MAST")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MAST")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details biocViews DifferentialExpression, GeneExpression, GeneSetEnrichment, RNASeq, SingleCell, Software, Transcriptomics Version 1.35.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License GPL(>= 2) Depends SingleCellExperiment(>= 1.2.0), R (>= 3.5) Imports Biobase, BiocGenerics, S4Vectors, data.table, ggplot2, plyr, stringr, abind, methods, parallel, reshape2, stats, stats4, graphics, utils, SummarizedExperiment(>= 1.5.3), progress, Matrix System Requirements URL https://github.com/RGLab/MAST/ Bug Reports https://github.com/RGLab/MAST/issues See More Suggests knitr, rmarkdown, testthat, lme4 (>= 1.0), blme, roxygen2 (> 6.0.0), numDeriv, car, gdata, lattice, GGally, GSEABase, NMF, TxDb.Hsapiens.UCSC.hg19.knownGene, rsvd, limma, RColorBrewer, BiocStyle, scater, DelayedArray, HDF5Array, zinbwave, dplyr Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package ArchivesFollow Installation instructions to use this package in your R session.
Source Package Windows Binary (x86_64) macOS Binary (x86_64) macOS Binary (arm64) Source Repository git clone https://git.bioconductor.org/packages/MAST Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MAST Package Short Url https://bioconductor.org/packages/MAST/ Package Downloads Report Download StatsRetroSearch is an open source project built by @garambo | Open a GitHub Issue
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