Package: SpectraQL
Authors: Johannes Rainer [aut, cre] (ORCID: https://orcid.org/0000-0002-6977-7147), Andrea Vicini [aut], Sebastian Gibb [ctb] (ORCID: https://orcid.org/0000-0001-7406-4443)
Compiled: Sun May 18 19:17:35 2025
The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry (MS) centric fashion. It is inspired by SQL, but it attempts to bake in assumptions of MS to make querying much more natural for MS users.
The SpectraQL package provides support for the MassQL language in R, for MS data represented by Spectra objects defined in Bioconductorâs Spectra package.
The package can be installed with the BiocManager package using:
## Install BiocManager, if not already installed
install.packages("BiocManager")
## Install the package
BiocManager::install("SpectraQL")## R version 4.5.0 (2025-04-11)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.2 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.22-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods
## [8] base
##
## other attached packages:
## [1] msdata_0.49.0 SpectraQL_1.3.1 ProtGenerics_1.41.0
## [4] Spectra_1.19.0 BiocParallel_1.43.2 S4Vectors_0.47.0
## [7] BiocGenerics_0.55.0 generics_0.1.4 BiocStyle_2.37.0
##
## loaded via a namespace (and not attached):
## [1] jsonlite_2.0.0 compiler_4.5.0 BiocManager_1.30.25
## [4] tinytex_0.57 Rcpp_1.0.14 Biobase_2.69.0
## [7] magick_2.8.6 parallel_4.5.0 cluster_2.1.8.1
## [10] jquerylib_0.1.4 IRanges_2.43.0 yaml_2.3.10
## [13] fastmap_1.2.0 R6_2.6.1 knitr_1.50
## [16] MASS_7.3-65 bookdown_0.43 bslib_0.9.0
## [19] rlang_1.1.6 cachem_1.1.0 xfun_0.52
## [22] fs_1.6.6 MsCoreUtils_1.21.0 sass_0.4.10
## [25] cli_3.6.5 magrittr_2.0.3 ncdf4_1.24
## [28] digest_0.6.37 mzR_2.43.0 MetaboCoreUtils_1.17.1
## [31] lifecycle_1.0.4 clue_0.3-66 evaluate_1.0.3
## [34] codetools_0.2-20 rmarkdown_2.29 tools_4.5.0
## [37] htmltools_0.5.8.1RetroSearch is an open source project built by @garambo | Open a GitHub Issue
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