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Bioconductor - fluentGenomics (development version)

This is the development version of fluentGenomics; for the stable release version, see fluentGenomics.

Bioconductor version: Development (3.22)

An extended workflow using the plyranges and tximeta packages for fluent genomic data analysis. Use tximeta to correctly import RNA-seq transcript quantifications and summarize them to gene counts for downstream analysis. Use plyranges for clearly expressing operations over genomic coordinates and to combine results from differential expression and differential accessibility analyses.

Author: Stuart Lee [aut, cre] ORCID: 0000-0003-1179-8436 , Michael Love [aut, ctb]

Maintainer: Stuart Lee <stuart.andrew.lee at gmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("fluentGenomics")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fluentGenomics")

Follow Installation instructions to use this package in your R session.

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