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Showing content from https://bioconductor.org/packages/devel/bioc/html/../../data/experiment/html/scRNAseq.html below:

Bioconductor - scRNAseq (development version)

scRNAseq

This is the development version of scRNAseq; for the stable release version, see scRNAseq.

Collection of Public Single-Cell RNA-Seq Datasets

Bioconductor version: Development (3.22)

Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.

Author: Davide Risso [aut, cph], Michael Cole [aut], Aaron Lun [ctb, cre], Alan O'Callaghan [ctb], Jens Preussner [ctb], Charlotte Soneson [ctb], Stephany Orjuela [ctb], Daniel Bunis [ctb], Milan Malfait [ctb]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("scRNAseq")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("scRNAseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scRNAseq")
Details biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData Version 2.23.0 License CC0 Depends SingleCellExperiment Imports utils, methods, Matrix, BiocGenerics, S4Vectors, SparseArray, DelayedArray, GenomicRanges, SummarizedExperiment, ExperimentHub(>= 2.3.4), AnnotationHub(>= 3.3.6), AnnotationDbi, ensembldb, GenomicFeatures, alabaster.base, alabaster.matrix, alabaster.sce, gypsum, jsonlite, DBI, RSQLite System Requirements URL See More Suggests BiocStyle, knitr, rmarkdown, testthat, jsonvalidate, BiocManager Linking To Enhances Depends On Me OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.workflows, SingleRBook Imports Me Suggests Me APL, BASiCS, batchelor, bluster, ccImpute, ClusterFoldSimilarity, Coralysis, destiny, dittoSeq, Glimma, iSEE, iSEEfier, iSEEhex, iSEEindex, iSEEu, miloR, miQC, mumosa, ReactomeGSA, scAnnotatR, scater, scDblFinder, scDiagnostics, scDotPlot, scFeatureFilter, scone, scran, scrapper, scTreeViz, scuttle, SingleCellExperiment, SingleR, SplineDV, UCell, velociraptor, zellkonverter, zinbwave, scStability, speakeasyR Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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