This is the development version of scATAC.Explorer; for the stable release version, see scATAC.Explorer.
A Collection of Single-cell ATAC Sequencing Datasets and Corresponding MetadataBioconductor version: Development (3.22)
This package provides a tool to search and download a collection of publicly available single cell ATAC-seq datasets and their metadata. scATAC-Explorer aims to act as a single point of entry for users looking to study single cell ATAC-seq data. Users can quickly search available datasets using the metadata table and download datasets of interest for immediate analysis within R.
Author: Arrian Gibson-Khademi [aut, cre], Erik Christensen [aut], Jonathan Wang [aut], Parisa Shooshtari [aut]
Maintainer: Arrian Gibson-Khademi <agibsonk at uwo.ca>
Citation (from within R, entercitation("scATAC.Explorer")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("scATAC.Explorer")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scATAC.Explorer")Follow Installation instructions to use this package in your R session.
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